Low Coverage Genome Sequencing - SRA

SRX199925: Low Coverage Genome Sequencing
8 ILLUMINA (Illumina HiSeq 2000) runs: 20.3M spots, 4.1G bases, 2Gb downloads

UUID: 272f39bd-d8b6-42be-b5f5-5fc853faa80c

Design: Low Coverage Genome Sequencing

Submitted by: Broad Institute (BI)

Study: Whole genome sequencing of (LWK) Luhya in Webuye, Kenya HapMap population

Sample: Coriell GM19023

Library:

Name: Sage-109731

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

lsid: broadinstitute.org:bsp.prod.sample:3DAZD

project: G22839

sample_barcode: 219783.0

work_request: 31670

Name	Step	Program	Version	Notes
base caller	2012-08-27 22:05:29.0	GAPipeline	RTA1.13.48	Sequencer Application 1.5.15.1

Runs: 8 runs, 20.3M spots, 4.1G bases, 2Gb

Run	# of Spots	# of Bases	Size	Published
SRR604715	2,722,225	549.9M	282.5Mb	2012-10-22
SRR604799	2,468,601	498.7M	245.8Mb	2012-10-22
SRR604975	2,506,418	506.3M	250.6Mb	2012-10-22
SRR605013	2,461,775	497.3M	244.9Mb	2012-10-22
SRR605095	2,430,369	490.9M	240.1Mb	2012-10-22
SRR605253	2,474,233	499.8M	247Mb	2012-10-22
SRR605280	2,752,095	555.9M	286.6Mb	2012-10-22
SRR605304	2,475,311	500M	247.6Mb	2012-10-22

Supplemental Content

Uncultured Nitrosomonas sp. clone M31 ammonia monooxygenase (amoA) gene, partial...
Uncultured Nitrosomonas sp. clone M31 ammonia monooxygenase (amoA) gene, partial cds
gi|1394370049|gb|MG831302.1|

Nucleotide
PREDICTED: Rattus norvegicus MAP-kinase activating death domain (Madd), transcri...
PREDICTED: Rattus norvegicus MAP-kinase activating death domain (Madd), transcript variant X21, mRNA
gi|2678932624|ref|XM_039106019.2|

Nucleotide
PREDICTED: Rattus norvegicus Ral GEF with PH domain and SH3 binding motif 2 (Ral...
PREDICTED: Rattus norvegicus Ral GEF with PH domain and SH3 binding motif 2 (Ralgps2), transcript variant X3, mRNA
gi|2678891785|ref|XM_039090757.2|

Nucleotide
Homo sapiens MAGE family member B1 (MAGEB1), RefSeqGene on chromosome X
Homo sapiens MAGE family member B1 (MAGEB1), RefSeqGene on chromosome X
gi|283806574|ref|NG_016336.1|

Nucleotide

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SRA